PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_36345.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 164aa    MW: 19045.9 Da    PI: 9.5043
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_36345.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-172368555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  hn  ErrRRd+iN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  MLOC_36345.2 23 HNFSERRRRDKINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 68
                  99************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-201675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.4571867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-212294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-152368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-172372No hitNo description
SMARTSM003531.3E-182473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEDGRALRRM SIPTRRSRSA DFHNFSERRR RDKINEKLKA LQELLPNCTK TDKVSMLDEA  60
IDYLKSLQLQ LQMLVMGKGM APVVPPELQQ YMHYITTDPA AQLMQIPPSE PPRPFQITHA  120
NPPQQESDFL SQMQNHLHPS DQPQINFLRP PKLQLYTPFS TMHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
22732RRRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505720.0AK250572.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86m18, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240432.13e-84PREDICTED: transcription factor PIF1-like isoform X2
SwissprotO805362e-29PIF3_ARATH; Transcription factor PIF3
TrEMBLM0VQ521e-118M0VQ52_HORVD; Uncharacterized protein
STRINGMLOC_36345.31e-111(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-30phytochrome interacting factor 3